Yasuoka Laboratory


  • Year 2014 (International Conferences)
    • Yamamoto, E., Akimoto, T., Yasui, M., and Yasuoka, K., "Origin of 1/f fluctuations of number of water molecules on lipid membrane surfaces", International Symposium on Extended Molecular Dynamics and Enhanced Sampling:Nosé Dynamics 30 Years (NOSE30), Tokyo, Japan, 10-11, Nov., 2014 (11, Nov., 2014).

    • Hiratsuka, M., Ohmura, R., Sum, A. K., Alavi, S., and Yasuoka, K., "Vibrational spectra of alcohol molecules in clathrate hydrates", International Symposium on Extended Molecular Dynamics and Enhanced Sampling:Nosé Dynamics 30 Years (NOSE30), Tokyo, Japan, 10-11, Nov., 2014 (11, Nov., 2014).

    • Nozawa, T., Takahashi, K., Narumi, T. and Yasuoka, K., "The effects of handling coulomb interaction on transport characteristic of liquid crystal system", International Symposium on Extended Molecular Dynamics and Enhanced Sampling:Nosé Dynamics 30 Years (NOSE30), Tokyo, Japan, 10-11, Nov., 2014 (11, Nov., 2014).

    • Doi, H. and Yasuoka, K., "Pressure and temperature controlling in generalized isobaric-isothermal ensembles", International Symposium on Extended Molecular Dynamics and Enhanced Sampling:Nosé Dynamics 30 Years (NOSE30), Tokyo, Japan, 10-11, Nov., 2014 (11, Nov., 2014).

    • Shibuya, T., Yasuoka, K., Mirbt, S. and Sanyal, B., "DFT study of Ti3+ states near oxygen vacancy on TiO2 (110): a new interpretation of STM", International Symposium on Extended Molecular Dynamics and Enhanced Sampling:Nosé Dynamics 30 Years (NOSE30), Tokyo, Japan, 10-11, Nov., 2014 (11, Nov., 2014).

    • Yuhara, D., Suh, D., Barnes B.C.,Wu, D.T. , Sum, A.K., and Yasuoka, K., "Extended Study on Molecular Dynamics of Methane Hydrate Nucleation", International Symposium on Extended Molecular Dynamics and Enhanced Sampling:Nosé Dynamics 30 Years (NOSE30), Tokyo, Japan, 10-11, Nov., 2014 (11, Nov., 2014).

    • Takaiwa, D., Sakamaki, R., Sum, A. K., Narumi, T., and Yasuoka, K., "The water model dependency of the melting point of hexagonal ice", International Symposium on Extended Molecular Dynamics and Enhanced Sampling:Nosé Dynamics 30 Years (NOSE30), Tokyo, Japan, 10-11, Nov., 2014 (11, Nov., 2014).

    • Inoue, K., Takaiwa, D., Yasuoka, K., and Mikami, M., "Molecular dynamics study of glycolipids/lipids membrane with Coarse-Grained Model", International Symposium on Extended Molecular Dynamics and Enhanced Sampling:Nosé Dynamics 30 Years (NOSE30), Tokyo, Japan, 10-11, Nov., 2014 (11, Nov., 2014).

    • Tomobe, K., Yamamoto, E., Kholmurodov, K. and Yasuoka, K., "Comparison of conserved water molecules in rhodopsin and opsin: Molecular dynamics study", International Symposium on Extended Molecular Dynamics and Enhanced Sampling:Nosé Dynamics 30 Years (NOSE30), Tokyo, Japan, 10-11, Nov., 2014 (11, Nov., 2014).

    • Winarto, Takaiwa, D., Yamamoto, E., and Yasuoka, K., "Preference of Water and Methanol Molecules Flowing into Carbon Nanotubes under Influence of Electric Field", International Symposium on Extended Molecular Dynamics and Enhanced Sampling:Nosé Dynamics 30 Years (NOSE30), Tokyo, Japan, 10-11, Nov., 2014 (10, Nov., 2014).

    • Kaneko, T., Bai, J., Yasuoka, K., Mitsutake, A. and Zeng, X. C., "Free energy surface of Water Confined in Slit Pores", International Symposium on Extended Molecular Dynamics and Enhanced Sampling:Nosé Dynamics 30 Years (NOSE30), Tokyo, Japan, 10-11, Nov., 2014 (10, Nov., 2014).

    • Brumby, P., Yasuoka, K., "Monte Carlo simulation of chiral liquid crystals with large pitch distances", International Symposium on Extended Molecular Dynamics and Enhanced Sampling:Nosé Dynamics 30 Years (NOSE30), Tokyo, Japan, 10-11, Nov., 2014 (10, Nov., 2014).

    • Inoue, K., Yamamoto, E., Akimoto, T., and Yasuoka, K., "Flip-flop pathways of lipid molecules in a model membrane", Dushanbe Symposium on Computational Materials and Biological Sciences, Dushanbe, Tajikistan, 23-28, Sep., 2014 (24, Sep., 2014).

    • Tomobe, K., Yamamoto, E., Kholmurodov, K. and Yasuoka, K., "Molecular dynamics simulation of Rhodopsin and Opsin: Comparison of structure and hydration", Dushanbe Symposium on Computational Materials and Biological Sciences, Dushanbe, Tajikistan, 23-28, Sep., 2014 (24, Sep., 2014).

    • Suh, D., Yasuoka K., and Zeng, X.C., "Simulations of Vapor-to-Liquid Nucleation on Various Solid Precursor Particle Configurations by Molecular Dynamics", Dushanbe Symposium on Computational Materials and Biological Sciences, Dushanbe, Tajikistan, 23-28, Sep., 2014 (24, Sep., 2014).

    • Suh, D., Yasuoka K., and Zeng, X.C., "Simulations of Vapor-to-Liquid Nucleation on Various Solid Precursor Particle Configurations by Molecular Dynamics", 7th Russian-Japanese Symposium on Molecular Simulation Studies in Material and Biological Sciences, Moscow, Russia, 21-22, Sep., 2014 (21, Sep., 2014).

    • Yamamoto, E., Akimoto, T., Yasui, M., Yasuoka, K, "1/f noise in hydration dynamics on lipid membrane surfaces", Molecular Simulation Studies in Material and Biological Sciences, Moscow, Russia, 20-22, Sep., 2014 (21, Sep., 2014).

    • Tomobe, K., Yamamoto, E., Akimoto, E., Yasui, M. and Yasuoka, K., "Structural and hydration influence of pathogenic point mutation T188R: a molecular dynamics study", Molecular Simulation Studies in Material and Biological Sciences, Moscow, Russia, 20-22, Sep., 2014 (21, Sep., 2014).

    • Suh, D., Yasuoka K., and Zeng, X.C., "Molecular Dynamics Simulation of Aerosol Growth from Various Seed Configurations", 2014 International Conference on Aerosols, Busan, Korea, 28-02, Aug., 2014 (29, Aug., 2014).

    • Suh, D., Yasuoka K., and Zeng, X.C., "Nanoparticle Generation from Various Seed Particles by Molecular Dynamics", International Conference on Nanotechnology: Fundamentals and Applications, Prague, Czech Republic, 11-13, Aug., 2014 (11, Aug., 2014).

    • Shibuya, T., Yasuoka, K., Mirbt, S., Sanyal, B., Burton, A., L., Skelton, J., and Walsh, A., "Materials modelling for energy and fuels: From photovoltaics to photocatalysis", 248th ACS National Meeting and Exposition, San Francisco, US, 10-14, Aug., 2014 (12, Aug., 2014).

    • Shibuya, T., Yasuoka, K., Mirbt, S., and Sanyal, B., "Excess electron trapping at surface oxygen vacancy in TiO2 : Origin of STM anomaly", 248th ACS National Meeting and Exposition, San Francisco, US, 10-14, Aug., 2014 (10, Aug., 2014).

    • Hiratsuka, M., Ohmura, R., Sum, A. K., and Yasuoka, K., " Vibrational spectra of alcohol molecules in clathrate hydrates from ab initio MD simulations", The 8th International Conference on Gas Hydrates, Beijing, China, 28-01, Jul., 2014 (29, Jul., 2014).

    • Yuhara, D., Hiratsuka, M., Takaiwa, D., Ohmura, R., Sum, A. K., and Yasuoka, K., "Analysis of Methane Hydrate Nucleation by Molecular Dynamics Simulation", The 8th International Conference on Gas Hydrates, Beijing, China, 28-01, Jul., 2014 (29, Jul., 2014).

    • Suh, D., Yasuoka K., "Molecular dynamics simulations of vapor-to-liquid nucleation on various solid precursor particle configurations", The 9th Liquid Matter Conference (Liquids 2014), Lisbon, Portugal, 21-25, Jul., 2014 (24, Jul., 2014).

    • Koishi, T., Yasuoka, K., Fujikawa, S., and Zeng, X., "Molecular dynamics simulation of preferential adsorption of denaturant molecules on hydrophilic and hydrophobic surfaces", The 9th Liquid Matter Conference (Liquids 2014), Lisbon, Portugal, 21-25, Jul., 2014 (24, Jul., 2014).

    • Nozawa, T., Takahashi, K. Z., Narumi, T., and Yasuoka, K., "Molecular Dynamics simulation for liquid crystal system using isotropic periodic sum method", The 9th Liquid Matter Conference (Liquids 2014), Lisbon, Portugal, 21-25, Jul., 2014 (23, Jul., 2014).

    • Kaneko, T., Bai, J., Yasuoka, K., Mitsutake, A., and Zeng, X., "Phase transitions of water confined between two parallel hydrophobic surfaces", The 9th Liquid Matter Conference (Liquids 2014), Lisbon, Portugal, 21-25, Jul., 2014 (22, Jul., 2014).

    • Arai, N., Yasuoka, K., and Zeng, X., "Self-assemby of triblock Janus nanoparticles solutions confined to a nanoslit using dissipative particle dynamics simulation", The 9th Liquid Matter Conference (Liquids 2014), Lisbon, Portugal, 21-25, Jul., 2014 (22, Jul., 2014).

    • Tomobe, K., Yamamoto, E., Takuma, A., Yasui, M., and Yasuoka, K., "Molecular dynamics study of conserved water molecules in PrPc and pathological point mutation T188R", Biophysical Society 58th Annual Meeting, San Francisco, California, USA, 15-19, Feb., 2014 (18, Feb., 2014).

    • Yamamoto, E., Akimoto,T., Hirano, Y., Yasui, M., and Yasuoka, K., "1/f fluctuations of amino acids generate non-Poisson water transportation in AQP1", Biophysical Society 58th Annual Meeting, San Francisco, California, USA, 15-19, Feb., 2014 (18, Feb., 2014).


Yasuoka Laboratory