Yasuoka Laboratory


  • Year 2025 (International Conferences)

    • Yasuda, I., Yamamoto, E., Yasuoka, K. and Lindorff-Larsen, K., "Secondary-structure-dependent partitioning of RNA into biomolecular condensate using coarse-grained molecular dynamics simulation", The International Chemical Congress of Pacific Basin Societies 2025, Honolulu, USA, 15-20, Dec., 2025 (19, Dec., 2025).

    • Asano, S., Yasuda, I., Endo, K., Hirano, Y. and Yasuoka, K., "An Unsupervised Deep Learning Method to Identify Characteristic Amino Acid Residues by Comparing Similar Molecular Dynamics Systems", The International Chemical Congress of Pacific Basin Societies 2025, Honolulu, USA, 15-20, Dec., 2025 (19, Dec., 2025).

    • Kojima, T., Yasuda, I., Sato, T., Arai, N. and Yasuoka, K., "Enhanced premelting at ice–rubber interface using molecular dynamics simulation", The International Chemical Congress of Pacific Basin Societies 2025, Honolulu, USA, 15-20, Dec., 2025 (16, Dec., 2025).

    • Yasuoka, K., "Molecular Simulations of Water Interface", The 4th International Conference on Mechanical Engineering Research and Application, Malang, Indonesia, 01-03, Oct., 2025 (01, Oct., 2025).

    • Sakaki, K., Endo, K. and Yasuoka, K., "New Developments in Machine Learning Models for Predicting Molecular Diffusive Dynamics", The 4th International Conference on Mechanical Engineering Research and Application, Malang, Indonesia, 01-03, Oct., 2025 (01, Oct., 2025).

    • Takahashi, S., Kuribayashi, N., Brumby, P. E., Winarto and Yasuoka, K., "Analysis of Carbon Dioxide Separation Ability of Perforated Graphene Sheets", The 4th International Conference on Mechanical Engineering Research and Application, Malang, Indonesia, 01-03, Oct., 2025 (01, Oct., 2025).

    • Yasuda, I., Bülow, S., Tesei, G., Yamamoto, E., Yasuoka, K. and Lindorff-Larsen, K., "Reentrant Phase Behavior and Selective Partitioning in Protein-RNA Condensates Using Molecular Dynamics Simulation", Biophysical Society Annual Meeting 2025, Los Angeles, USA, 15-19, Feb., 2025 (18, Feb., 2025).

    • Kobayashi, R., Yasuda, I., Hirano, Y. and Yasuoka, K., "Elucidation of the K516N Mutation in APC Protein on SAM68 Binding Affinity Using Molecular Dynamics Simulation", Biophysical Society Annual Meeting 2025, Los Angeles, USA, 15-19, Feb., 2025 (18, Feb., 2025).

    • Yano, K., Yasuda, I., Hirano, Y. and Yasuoka, K., "Investigation of Allosteric Inhibition Mechanism of PTP1B Using Molecular Dynamics Simulation", Biophysical Society Annual Meeting 2025, Los Angeles, USA, 15-19, Feb., 2025 (18, Feb., 2025).

    • Shobu, K., Hirano, Y. and Yasuoka, K., "Investigation of the Early Activation Stage of CHR2 Using Molecular Dynamics Simulations", Biophysical Society Annual Meeting 2025, Los Angeles, USA, 15-19, Feb., 2025 (17, Feb., 2025).

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