Yasuoka Laboratory



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  • 2015年 (18 papers)
    • Suh, D., Nakamura, M. and Yasuoka, K., "Heterogeneous nucleation of bubbles by molecular dynamics", J. Phys. Conf. Series, 656, 012037(2015). (4 pages.) DOI: 10.1088/1742-6596/656/1/012037

    • Nozawa, T., Takahashi, K. Z., Narumi, T. and Yasuoka, K., "Comparison of the Accuracy of Periodic Reaction Field Methods in Molecular Dynamics Simulations of a Model Liquid Crystal System", J. Comput. Chem., 36, 2406-2411(2015). (6 pages.) DOI: 10.1002/jcc.24222

    • Yamamoto, E., Kalli, A. C., Akimoto, T., Yasuoka, K. and Sansom, M. S. P., "Anomalous dynamics of a lipid recognition protein on a membrane surface", Sci. Rep., 5, 18245(2015). (12 pages.) DOI: 10.1038/srep18245

    • 山本詠士, 秋元琢磨, 泰岡顕治, "分子動力学シミュレーションによる細胞膜表面での水分子の異常拡散の解明", 生物物理, 55, 242-245(2015). (4 pages.) DOI: 10.2142/biophys.55.242 :Selected as a cover

    • Doi, H. and Yasuoka, K., "Approaches for controlling the temperature and pressure range in generalized NPT ensembles", J. Chem. Theory Comput., 11, 4370-4376(2015). (7 pages.) DOI: 10.1021/acs.jctc.5b00195

    • Winarto, Takaiwa, D., Yamamoto, E. and Yasuoka, K., "Water-methanol separation with carbon nanotubes and electric fields", Nanoscale, 7, 12659-12665(2015). (7 pages.) DOI: 10.1039/C5NR02182K

    • Suh, D., Yasuoka, K. and Zeng, X. C., "Molecular Dynamics Simulation of Heterogeneous Nucleation on Nanotubes", R. Soc. Chem. Adv., 5, 40953-40963(2015). (11 pages.) DOI: 10.1039/C5RA04398K

    • Hiratsuka, M., Ohmura, R., Sum, A. K., Alavi, S. and Yasuoka, K., "Molecular dynamics study of guest-host hydrogen bonding in alcohol clathrate hydrates", Phys. Chem. Chem. Phys., 17, 12639-12647(2015). (9 pages.) DOI: 10.1039/C4CP05732E

    • Winarto, Takaiwa, D., Yamamoto, E. and Yasuoka, K., "Structures of water molecules in carbon nanotubes under electric fields", J. Chem. Phys., 142, 124701(2015). (9 pages.) DOI: 10.1063/1.4914462 :Selected as a cover

    • Yamamoto, E., Akimoto, T., Yasui, M. and Yasuoka, K., "Origin of 1/f Noise in Hydration Dynamics on Lipid Membrane Surfaces", Sci. Rep., 5, 8876(2015). (6 pages.) DOI: 10.1038/srep08876

    • Yuhara, D., Barnes, B. C., Suh, D., Knott, B. C., Beckham, G. T., Yasuoka, K., Wu, D. T. and Sum, A. K., "Nucleation rate analysis of methane hydrate from molecular dynamics simulations", Faraday Discussions, 179, 463-474(2015). (12 pages.) DOI: 10.1039/C4FD00219A

    • Nozawa, T., Takahashi, K. Z., Kameoka, S., Narumi, T. and Yasuoka, K., "Application of isotropic periodic sum method for 4-pentyl-4'-cyanobiphenyl liquid crystal", Molec. Simul., 41, 927-935(2015). (9 pages.) DOI: 10.1080/08927022.2014.998210

    • Takahashi, K. Z. and Yasuoka, K., "A determination of liquid-vapor interfacial properties for methanol using a linear-combination-based isotropic periodic sum", Molec. Simul., 41, 795-800(2015). (6 pages.) DOI: 10.1080/08927022.2014.913791

    • Hiratsuka, M., Ohmura, R., Sum, A. K. and Yasuoka, K., "Vibrational Spectra of Deuterated Methane and Water Molecules in Structure I Clathrate Hydrate from ab initio MD simulation", Molec. Simul., 41, 813-817(2015). (5 pages.) DOI: 10.1080/08927022.2014.929125

    • Tomobe, K., Yamamoto, E., Dusan, K., Yasui, M. and Yasuoka, K., "Velocity auto-correlation function of ions and water molecules in different concentrations, anions, and ion clusters", Molec. Simul., 41, 840-844(2015). (5 pages.) DOI: 10.1080/08927022.2014.940500

    • Nomura K., Oikawa M., Kawai A., Narumi T. and Yasuoka, K., "GPU-accelerated replica exchange molecular simulation on solid-liquid phase transition study of Lennard-Jones fluids", Molec. Simul., 41, 874-880(2015). (7 pages.) DOI: 10.1080/08927022.2014.954572

    • Suh, D. and Yasuoka, K., "Nanoscale Droplet Vaporization by Molecular Dynamics", Molec. Simul., 41, 896-904(2015). (9 pages.) DOI: 10.1080/08927022.2014.968851

    • Yuhara, D., Hiratsuka, M., Takaiwa, D. and Yasuoka, K., "Analysis of crystal growth of methane hydrate using molecular dynamics simulation", Molec. Simul., 41, 918-922(2015). (5 pages.) DOI: 10.1080/08927022.2014.978313

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