Yasuoka Laboratory




Conferences


Published Articles (Recent 10 papers)

last update : 06/03,2026

Yoshine, R., Hirano, Y., Doi, H., Kitahara, S., Akisawa, K., Okuwaki, K., Yamamoto, E., Yasuoka, K. and Mochizuki, Y., "Residue‑resolved dynamically averaged interaction analysis of direct factor Xa inhibitors by MD‑FMO combination calculations", Journal of Computer-Aided Molecular Design, 40, 132(2026). (15 pages) DOI: 10.1007/s10822-026-00846-x

Shoji, T., Shinojima, A., Kishimoto, T., Sato, K., Ikegami, N., Yumoto, E., Shindo, R., Uchida, Y., Kusumi, S., Koga, D., Yamamoto, E., Hirano, Y., Ogino, R., Shibata, H., Izawa, K., Yasumi, T., Sato, R., Nakayama, J., Higashiyama, S., Hasegawa, J., Kajiho, H., Sasaki, T., Kuchitsu, Y. and Taguchi, T., "A PI(3,5)P2/CHMP4B axis on lysosomes is essential for microautophagic degradation of STING", Nature Communications, 17, 4602(2026). (17 pages) DOI: 10.1038/s41467-026-72828-4

Yano, K., Yasuda, I., Hirano, Y. and Yasuoka, K., "Allosteric inhibition mechanism of PTP1B by DPM-1001 using molecular dynamics simulation", Biophysical Journal, 125, 1-10(2026). (10 pages) DOI: 10.1016/j.bpj.2026.02.005

Kojima, T., Yasuda, I., Sato, T., Arai, N. and Yasuoka, K., "Enhanced premelting at the ice–rubber interface using all-atom molecular dynamics simulation", Langmuir, 42, 2454-2461(2026). (8 pages) DOI: 10.1021/acs.langmuir.5c04522

Ono, Y., Yamamoto, E. and Yasuoka, K., "Water-ethanol separation with Janus tip charged carbon nanotubes", Physical Chemistry Chemical Physics, 27, 25524-25535(2025). (12 pages) DOI: 10.1039/D5CP03818A

Suzuki, M., Adachi, K., Wiriyasermukul, P., Fukumura, M., Tamura, R., Hirano, Y., Aizawa, Y., Miyamoto, T., Taniguchi, S., Toda, M., Homma, H., Kanekura, K., Yasuoka, K., Kanai, T., Sugimoto, M., Nagamori, S., Yasui, M. and Sasabe, J., "D-serine suppresses one-carbon metabolism by competing with mitochondrial L-serine transport", Biochemistry and Chemical Biology(2025). DOI: 10.7554/eLife.108562.1

Zhang, L., Pan, Y., Uekusa, H., Suzuki, T., Dohmae, N., Hattori, A., Hirano, Y. and Kakeya, H., "Natural Lysine-Reactive Meroterpenoids, Stachybenzals A–C, as Covalent Asparagine Synthetase Inhibitors", Journal of Natural Products, 88, 1797-1803(2025). (7 pages) DOI: 10.1021/acs.jnatprod.5c00572

Winarto, W., Yuliati, L., Anam, K., Brumby, P. E. and Yasuoka, K., "A Molecular Dynamics Study of Enhanced CO2 Separation via Boron Nitride Nanotubes Embedded in a Silicon Nitride Membrane", Physical Chemistry Chemical Physics, 27, 14597-14605(2025). (10 pages) DOI: 10.1039/D5CP01337B

Nishihara, R., Kihara, Y., Yamamoto, E., Hirano, Y. and Kurita, R, "Discovery of Pseudo-Luciferase Activity in Immunoglobulin G (IgG) and Its Application to the Detection of IgG Denaturation", Analytical Chemistry, 97, 9935-9943(2025). (9 pages) DOI: 10.1021/acs.analchem.5c00646

Kato, Y., Muncan, J., Hirano, Y., Yamamoto, H., Tsenkova, R. and Yasui, M., "Identification of Redox State Based on the Difference in Solvation Dynamics", Chemistry Open, 14, e202400278(2025). (8 pages) DOI: 10.1002/open.202400278


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2026/06/03
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