泰岡研究室セミナー| 講師 | Dr. Kholmirzo T. Kholmurodov (Head of Computer Molecular Modeling sector, Laboratory of Radiation Biology, Joint Institute for Nuclear Research, Russia & Professor of DUBNA International University, Moscow region, Russia) | | 題目 | Molecular Dynamics Studies within a Number of the Material Science and Biological Models | | 日時 | 2010年06月25日(金) 10:45〜12:15 | | 場所 | 慶應義塾大学理工楽部 矢上キャンパス 34棟101 | | 概要 | Starting from my last visit (6.June.2009-8.August.2009) to Yasuoka Laboratory, as Visiting Professor of Keio University, and until now we have published several joint papers, performed MD simulation research and educational activity.
In the present talk I am going to report around several topics on the molecular dynamics study for the physical chemistry models and protein mutant structures outlined below as:
(1) “MD simulation of kinase CDK2-cyclinA complex: the effect of amino acid Gly16-- > Ser16 and Arg274-- > Gln274 substitutions on conformation of kinase subunit”,
Biophysics (Springer) , ISSN:0006-3509 , eISSN:1555-6654 , Pleiades Publishing, Inc., 2009, Vol. 54, No. 6, pp. 999-1004,
by Kh.T. Kholmurodov and N.A. Koltovaya
Joint Institute for Nuclear Research, Dubna, Moscow Region, 141980 Russia
DUBNA International University, Dubna, Moscow Region, 141980 Russia
(2) “Studies on the Conformational State of the Chromophore Group (11 cis Retinal) in Rhodopsin by Computer Molecular Simulation Methods”,
Biophysics (A simultaneous English language translation of this journal is available from Pleiades Publishing, Inc. Distributed worldwide by Springer. Biophysics ISSN 0006 3509.) 2009, Vol. 54, No. 4, pp. 465-471,
by T. B. Feldman, Kh. T. Kholmurodov, M. A. Ostrovskya, M. G. Khrenova, and A. V. Nemukhin,
Joint Institute for Nuclear Research, Dubna, Moscow Region, 141980 Russia
Emanuel Institute of Biochemical Physics, Russian Academy of Sciences, Moscow, 119334 Russia
Chemical Faculty, Moscow State University, Moscow, 119991 Russia
(3) “Molecular dynamics simulations of interactions of valinomycin with potassium and sodium ions in water solvent”,
Advances in Bioscience and Biotechnology, journal published by Scientific Research Publishing, USA, under preparation,
by Kholmirzo Kholmurodov, Maria Abasheva, Kenji Yasuoka,
Laboratory of Radiation Biology, Joint Institute for Nuclear Research, 41980, Dubna, Russia
International University “Dubna”, 141980, Dubna, Moscow Region, Russia
Department of Mechanical Engineering, Keio University, Yokohama 223-8522,Japan
(4) “JINR CICC in Computational Chemistry and Nanotechnology Problems: DL_POLY Performance for Different Communication Architectures”,
Physics of Particles and Nuclei Letters, 2009, Vol. 6, No. 3, pp. 251-256,
by E. Dushanov, Kh. Kholmurodov, G. Aru, V. Korenkov, W. Smith, Y. Ohno, T. Narumi, G. Morimoto, M. Taiji, and K. Yasuoka
Joint Institute for Nuclear Research, Dubna, Russia
Daresbury Laboratory, Warrington, UK
RIKEN, Yokohama, Japan,
Keio University, Yokohama, Japan
(5) “Molecular Dynamics Study of the Effect of Electrostatic Interactions on the Biphenyl Structure in the Active NO3 Solvent”,
The Open Physical Chemistry Journal, in press. 2010,
by Kh. Kholmurodov, A. Chulkova, and K. Yasuoka,
Joint Institute for Nuclear Research, Dubna, Russia
DUBNA International University, Dubna, Russia
Keio University, Yokohama, Japan
(6) “Molecular dynamics simulations of the interaction of carbon nanotube and a carbon disulfide solvent”,
Natural Science, in press. 2010,
by Kh. Kholmurodov, G. Aru, and K. Yasuoka,
Joint Institute for Nuclear Research, Dubna, Russia
DUBNA International University, Dubna, Russia
Keio University, Yokohama, Japan
(7) etc. |
*学内の方はご自由に参加ください．学外の方はご面倒ですが，泰岡までご連絡ください．
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